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Science in the Cloud 2019

Practical Example: Human SNPs

In this session, will be trying out many of the topics you learned this week.

What tasks do you recall from our sessions?

We’re going to practice putting all of these together!

Tasks and Goals:


23andMe DNA service


Task 0: Get 23andMe data


Task 1: Y-haplotype data

STEPS

remember outputs :

INSTEAD, let’s go get a GIT repo that repeats all these steps to build a Docker container:


Task 2: Mitochondrial Haplotypes

Source:

STEPS

remember outputs:

INSTEAD, let’s go get a GIT repo that repeats all these steps to build a Docker container:


Task3 : Display specific elements in a Jupyter Notebook

Steps

Moving Data and Compensating for mistake:


Questions: Could we have used other ways to have the data moved or to even launch and run the containers all at once?



Top: Course Overview